Publications by Dr John Perry - ePrints

Browsing publications by Dr John Perry.

Newcastle Authors	Title	Year
Dr Andrea Masi Dr Lauren Beck Dr John Perry Dr Claire Granger Dr Greg Young et al.	Human milk microbiota, oligosaccharide profiles, and infant gut microbiome in preterm infants diagnosed with necrotizing enterocolitis	2024
Dr David Nylander Professor John Leeds Dr John Perry Dr Manjusha Narayanan Dr Christian Dipper et al.	Bacterial contamination of endoscopist and assistant face visors during gastrointestinal endoscopy: A pilot study	2023
Dr Bernhard Kepplinger Lina Mardiana Joseph Cowell Dr Stephanie Morton-Laing Dr Yousef Dashti et al.	Discovery, Isolation, Heterologous Expression and Mode-of Action Studies of the Antibiotic Polyketide Tatiomicin from Amycolatopsis sp. DEM30355	2022
Dr Rui Han Professor Waldemar Vollmer Dr John Perry Dr Jinju Chen	Simultaneous determination of the mechanical properties and turgor of a single bacterial cell using atomic force microscopy	2022
Dr Stephen Bourke Dr John Perry	Decontamination strategies used for afb culture significantly reduce the viability of Mycobacterium abscessus complex in sputum samples from patients with cystic fibrosis	2021
Jonathan Scott Dr Marie-Helene Ruchaud Dr Kate Musgrave Dr Stephen Wright Dr John Perry et al.	Phosphoinositide 3-kinase δ inhibition improves neutrophil bacterial killing in critically ill patients at high risk of infection	2021
Dr John Perry Professor Kate Gould	In vitro effects of combined iron chelation, antibiotics and matrix disruption on clinical isolates of Pseudomonas aeruginosa	2020
Professor Christopher Ward Dr John Perry Amaran Krishnan Dr Rhys Jones Professor Jeffrey Pearson et al.	Clonally related viable nontuberculous mycobacteria in gastric juice and sputum in people with cystic fibrosis	2020
Professor Kate Gould Dr John Perry	Impact of rapid microbial identification on clinical outcomes in bloodstream infection: the RAPIDO randomized trial	2020
Dr Michael Mather Dr Michael Drinnan Dr John Perry Steven Powell Emerita Professor Janet Wilson et al.	A Systematic Review and Meta-Analysis of Antimicrobial Resistance in Paediatric Acute Otitis Media	2019
David Stephenson Dr Daniela Lee Jill Davison Dr Stephen Bourke Professor Anthony De Soyza et al.	An evaluation of methods for the isolation of nontuberculous mycobacteria from patients with cystic fibrosis, bronchiectasis and patients assessed for lung transplantation	2019
Dr John Perry	Evaluation of a novel rapidly-growing mycobacteria medium for isolation of Mycobacterium abscessus complex from respiratory specimens from patients with bronchiectasis	2019
Dr John Perry	Fluorogenic L-alanylaminopeptidase substrates derived from 6-amino-2-hetarylquinolines and 7-amino-3-hetarylcoumarins and their potential applications in diagnostic microbiology	2019
Mohammad Tariq Dr Giles Holt Dr Clare Lanyon Dr John Perry Professor Stephen Bourke et al.	Temperate Bacteriophages from Chronic Pseudomonas aeruginosa Lung Infections Show Disease-Specific Changes in Host Range and Modulate Antimicrobial Susceptibility	2019
Dr Sharon Cookson Santosh Murali Dr John Perry Dr Clare Lanyon Professor Anthony De Soyza et al.	Anti-bacterial antibody and T cell responses in bronchiectasis are differentially associated with lung colonization and disease	2018
Jason Powell Dr James Garnett Dr Michael Mather Dr Faye Cooles Dr Bernard Verdon et al.	Excess Mucin Impairs Subglottic Epithelial Host Defense in Mechanically Ventilated Patients	2018
Dr Hamed Mosaei Sejzi Dr Bernhard Kepplinger John Harbottle Lucia Ceccaroni Ceccaroni Dr Stephanie Morton-Laing et al.	Mode of Action of Kanglemycin A, an Ansamycin Natural Product that Is Active against Rifampicin Resistant Mycobacterium tuberculosis	2018
Dr Sonya Carnell Dr John Perry Dr Lee Borthwick Dr Daniela Vollmer Dr Jacob Biboy et al.	Targeting the bacterial cytoskeleton of the Burkholderia cepacia complex for antimicrobial development: A cautionary tale	2018
Dr John Perry	The synthesis of novel chromogenic enzyme substrates for detection of bacterial glycosidases and their applications in diagnostic microbiology	2018
Dr John Perry	A Carbocyclic Curcumin Inhibits Proliferation of Gram-Positive Bacteria by Targeting FtsZ	2017
Dr John Perry Dr Ed Schwalbe	A chromatographic approach to distinguish Gram-positive from Gram-negative bacteria using exogenous volatile organic compound metabolites	2017
Dr John Perry	Detection of l-alanylaminopeptidase activity in microorganisms using chromogenic self-immolative enzyme substrates	2017
Professor Christopher Stewart Professor Nicholas Embleton Dr Thomas Skeath Dr John Perry Professor Janet Berrington et al.	Longitudinal development of the gut microbiome and metabolome in preterm neonates with late onset sepsis and healthy controls	2017
Dr John Perry	Methods for the detection and identification of pathogenic bacteria: Past, present, and future	2017
Dr Hafez Al-momani Rhys Jones Professor Stephen Bourke Dr Simon Doe Dr John Perry et al.	Nontuberculous mycobacteria in gastrostomy fed patients with cystic fibrosis	2017
Dr Alison Robb Dr Matthew Thomas Dr Malcolm Brodlie Dr Stephen Bourke Dr John Perry et al.	A novel culture medium for isolation of rapidly-growing mycobacteria from the sputum of patients with cystic fibrosis	2016
Dr John Perry Professor Kate Gould	Antimicrobial Activity of Cysteamine Against Antibiotic Resistant Pathogens Isolated from Cystic Fibrosis and Non- CF Patients Including Mycobacterium abscessus Complex from Lung Transplant Recipients	2016
Dr John Perry	Detection of L-alanylaminopeptidase activity in microorganisms using fluorogenic self-immolative enzyme substrates	2016
Dr John Perry	Evaluation of fluorogenic aminonaphthalenesulfonamides and 6-hydrazinobenz[de]isoquinoline-1,3-diones for the detection of bacteria	2016
Amanda Jones Dr John Perry	Evaluation of various culture media for detection of rapidly growing mycobacteria from patients with cystic fibrosis	2016
Dr John Perry Professor Nicholas Embleton Professor Janet Berrington Professor Christopher Stewart	Routine use of probiotics in preterm infants: longitudinal impact on the microbiome and metabolome	2016
Dr Tom Skeath Dr John Perry Professor Nicholas Embleton Professor Janet Berrington Professor Christopher Stewart et al.	Stool bacterial load in preterm infants with necrotising enterocolitis	2016
Dr Victorovich Zaytsev Dr John Perry Dr Jerome Anderson	Synthesis and Evaluation of Novel 7-and 8-Aminophenoxazinones for the Detection of beta-Alanine Aminopeptidase Activity and the Reliable Identification of Pseudomonas aeruginosa in Clinical Samples	2016
Professor Christopher Stewart Professor Nicholas Embleton Dr Thomas Skeath Dr John Perry Professor Janet Berrington et al.	Temporal bacterial and metabolic development of the preterm gut reveals specific signatures in health and disease	2016
Dr John Perry	The synthesis of L-alanyl and β-alanyl derivatives of 2-aminoacridone and their application in the detection of clinically-important microorganisms	2016
Dr John Perry	2-(Nitroaryl)benzothiazole and benzoxazole derivatives as fluorogenic substrates for the detection of nitroreductase activity in clinically important microorganisms	2015
Mohammad Tariq Professor Anthony De Soyza Dr Simon Bridge Dr John Perry Dr Stephen Bourke et al.	A metagenomic approach to characterize temperate bacteriophage populations from Cystic Fibrosis and non-Cystic Fibrosis bronchiectasis patients	2015
Dr John Perry	Analysis of pathogenic bacteria using exogenous volatile organic compound metabolites and optical sensor detection	2015
Dr Alison Robb Dr Malcolm Brodlie Dr Stephen Bourke Dr John Perry	Comparison of various culture media for the isolation of non-tuberculous mycobacteria from respiratory samples from patients with cystic fibrosis	2015
Dr Clare Lanyon Dr John Perry	Evaluation of a new chromogenic medium, chromID OXA-48, for recovery of carbapenemase-producing Enterobacteriaceae from patients at a university hospital in Turkey	2015
Dr Suren Kanagasundaram Dr John Perry Dr Nicholas Hoenich Dr Rachael Fraser	Fluids for continuous renal replacement therapy - an evaluation of microbial integrity	2015
David Tiernan Dr John Perry Dr Gerard Meachery Professor Kate Gould	Most Effective In Vitro Antimicrobials for Treatment of Stenotrophomonas Maltophilia Infections in Cystic Fibrosis Lung Transplant Recipients	2015
Dr Hannah Jary Dr Jim Macfarlane Dr Katy Hester Therese Small Dr John Perry et al.	Non cystic fibrosis bronchiectasis: A longitudinal retrospective observational cohort study of Pseudomonas persistence and resistance	2015
Professor Christopher Stewart Dr Tom Skeath Dr Sara Johansson Fernstad Dr John Perry Professor Janet Berrington et al.	Preterm gut microbiota and metabolome following discharge from intensive care	2015
Amanda Jones Professor Andrew Fisher Dr Rahul Mahida Dr John Perry Ros Brown et al.	Nocardia kroppenstedtii sp nov., an actinomycete isolated from a lung transplant patient with a pulmonary infection	2014
Dr Muhammad Raza Dr John Perry	Pseudocitrobacter gen. nov., a novel genus of the Enterobacteriaceae with two new species Pseudocitrobacter faecalis sp. nov., and Pseudocitrobacter anthropi sp nov, isolated from fecal samples from hospitalized patients in Pakistan	2014
Dr Mohamed Elemraid Professor Stephen Rushton Dr John Perry Dr Matthew Thomas Professor Andrew Gennery et al.	A Case-Control Study to Assess the Urinary Pneumococcal Antigen Test in Childhood Pneumonia	2014
Dr John Perry	Development of a novel method for detection of Clostridium difficile using HS-SPME-GC-MS	2014
Dr Muhammad Raza Dr John Perry	Molecular Epidemiology of NDM-1-Producing Enterobacteriaceae and Acinetobacter baumannii Isolates from Pakistan	2014
Dr John Perry	Novel chromogenic aminopeptidase substrates for the detection and identification of clinically important microorganisms	2014
Dr Paul Purcell Dr Hannah Jary Dr John Perry Professor Christopher Stewart Dr Clare Lanyon et al.	Polymicrobial airway bacterial communities in adult bronchiectasis patients	2014
Dr John Perry	Synthesis of 2-arylbenzothiazole derivatives and their application in bacterial detection	2014
Dr Anders Andreasson Danai Karamanou Dr John Perry Dr Hannah Walden Stephen Clark et al.	The effect of ex vivo lung perfusion on microbial load in human donor lungs	2014
Dr Mohamed Elemraid Dr John Perry Professor Stephen Rushton Dr David Spencer Dr Matthew Thomas et al.	Aetiology of paediatric pneumonia after the introduction of pneumococcal conjugate vaccine	2013
Professor Christopher Stewart Dr Clare Lanyon Dr John Perry Professor Nicholas Embleton Professor Janet Berrington et al.	Bacterial and fungal viability in the preterm gut: NEC and sepsis	2013
Dr John Perry Professor Kate Gould	Comparison of two selective media for the recovery of Clostridium difficile from environmental surfaces	2013
Dr John Perry Dr Stephen Bourke Professor Anthony De Soyza	Determining the influence of environmental and patient specific factors on the polymicrobial communities of the cystic fibrosis airway	2013
Dr John Perry Dr Stephen Bourke Professor Anthony De Soyza	Determining the influence of environmental and patient specific factors on the polymicrobial communities of the cystic fibrosis airway	2013
Professor Christopher Stewart Dr Clare Lanyon Dr John Perry Professor Nicholas Embleton Professor Janet Berrington et al.	Development of the Preterm Gut Microbiome in Twins at Risk of Necrotising Enterocolitis and Sepsis	2013
Dr Mohamed Elemraid Dr Matthew Thomas Professor Stephen Rushton Dr John Perry Dr David Spencer et al.	Pneumococcal diagnosis and serotypes in childhood community-acquired pneumonia	2013
Dr John Perry	The potential impact of washing machines on laundry malodour generation	2013
Dr Lee Borthwick Dr Rahul Mahida Andrew Walker Aaron Gardner Wona Suwara et al.	TNFα From Classically Activated Macrophages Accentuates Epithelial to Mesenchymal Transition in Obliterative Bronchiolitis	2013
Dr Clare Lanyon Dr Muhammad Raza Dr John Perry	Comparison of Four Chromogenic Culture Media for Carbapenemase-Producing Enterobacteriaceae	2012
Anne Nicholson Dr John Perry Dr Sonya Carnell Dr Anjam Khan Professor Anthony De Soyza et al.	In vitro activity of S-(3,4-dichlorobenzyl)isothiourea hydrochloride and novel structurally related compounds against multidrug-resistant bacteria, including Pseudomonas aeruginosa and Burkholderia cepacia complex	2012
Professor Anthony De Soyza Dr John Perry	Polymicrobial challenges to Koch's postulates: Ecological lessons from the bacterial vaginosis and cystic fibrosis microbiomes	2012
Dr John Perry	Synthesis and evaluation of fluorogenic 2-amino-1,8-naphthyridine derivatives for the detection of bacteria	2012
Dr John Perry Dr Gerard Meachery Dr James Lordan Professor Andrew Fisher Professor Kate Gould et al.	Targeted Antibiotic Prophylaxis for Lung Transplantation in Cystic Fibrosis Patients Colonised with Pseudomonas aeruginosa Using Multiple Combination Bactericidal Testing	2012
Professor Christopher Stewart Dr Clare Lanyon Dr John Perry Professor Nicholas Embleton Professor Janet Berrington et al.	The preterm gut microbiota: changes associated with necrotizing enterocolitis and infection	2012
Dr John Perry Dr Vindhya Salwatura	2-Arylbenzothiazole, benzoxazole and benzimidazole derivatives as fluorogenic substrates for the detection of nitroreductase and aminopeptidase activity in clinically important bacteria	2011
Dr John Perry Professor Anthony De Soyza	Molecular fingerprinting and metagenomic analysis reveals a polymicrobial element in patients with chronic obstructive pulmonary disease	2011
Dr John Perry Dr Muhammad Raza Katherine Gould Professor Colin Harwood	SmaI restriction site-based multiplex PCR for typing of hospital and community acquired Staphylococcus aureus	2011
Dr Stephen Bourke Dr John Perry	Temporal dynamics of polymicrobial communities in the lower respiratory tract of patients with cystic fibrosis	2011
Dr Sergey Savelev Dr John Perry Dr Stephen Bourke Professor Robert Taylor Professor Andrew Fisher et al.	Volatile biomarkers of Pseudomonas aeruginosa in cystic fibrosis and non cystic fibrosis bronchiectasis	2011
Professor Anthony De Soyza Dr Stephen Bourke Dr John Perry	A comparative study of polymicrobial diversity in CF and in non-CF bronchiectasis	2010
Professor Anthony De Soyza Dr Stephen Bourke Dr John Perry	Assessment of sample handling practices on microbial activity in sputum samples from patients with cystic fibrosis	2010
Dr Elizabeth Moisey Dr Lee Borthwick Dr John Perry Professor Anthony De Soyza Professor Andrew Fisher et al.	Cigarette smoke dysregulates pro-inflammatory cytokine release from airway epithelial cells and macrophages in response to haemophilus influenzae	2010
Dr Victoria Ewan Dr John Perry Professor Giles McCracken Dr Andrew Brown Emerita Professor Julia Newton et al.	Detecting potential respiratory pathogens in the mouths of older people in hospital	2010
Dr Sergey Savelev Dr John Perry Dr Stephen Bourke Professor Roy Taylor Professor Andrew Fisher et al.	Identification of pseudomonas aeruginosa infection via volatile organic compounds in sputum headspace gases	2010
Dr Malcolm Brodlie Dr Michael McKean Dr John Perry Dr Burns Verdon Dr Michael Gray et al.	Primary bronchial epithelial cell culture from explanted cystic fibrosis lungs	2010
Dr Sonya Carnell Dr John Perry Dr Anjam Khan Professor Anthony De Soyza	The bacterial cytoskeleton-A new antimicrobial target in cystic fibrosis pathogens?	2010
Amanda Jones Dr Roland Koerner Dr Srinivasan Natarajan Dr John Perry Professor Michael Goodfellow et al.	Dietzia papillomatosis sp. nov., a novel actinomycete isolated from the skin of an immunocompetent patient with confluent and reticulated papillomatosis	2008
Dr John Perry Professor Andrew Fisher Professor Kate Gould	Antagonism between colistin and meropenem in Pseudomonas aeruginosa isolates from lung transplant patients	2007
Dr John Perry Professor Kate Gould	Evaluation of novel chromogenic substrates for the detection of bacterial beta-glucosidase	2007
Dr John Perry Professor Kate Gould	Synergistic activities of temocillin and tigecycline in combination with 12 antimicrobial agents against strains of Burkholderia cepacia isolated pre and post lung transplantation	2007
Dr John Perry Professor Kate Gould Dr Muhammad Raza Professor Andrew Fisher	Synergistic activities of twelve agents tested as triple combinations against 30 strains of multiresistant Pseudomonas aeruginosa and Burkholderia cepacia isolated pre and post lung transplantation	2007
Dr John Perry	Synthesis and evaluation of novel chromogenic aminopeptidase substrates for microorganism detection and identification	2007
Dr John Perry	The application of chromogenic media in clinical microbiology	2007
Dr John Perry Professor Kate Gould	Evaluation of a new chromogenic agar medium for isolation and identification of Group B streptococci	2006
Dr John Perry Professor Kate Gould	Evaluation of novel fluorogenic substrates for the detection of glycosidases in Escherichia coli and enterococci	2006
Professor Kate Gould Dr John Perry	Guidelines for the prevention of endocarditis: report of the Working Party of the British Society for Antimicrobial Chemotherapy	2006
Dr John Perry	The synthesis and evaluation of some coumarin derivatives as fluorescent indicators of nitroreductase activity	2006
Dr John Perry Dr Katherine Orr	Thymidine-dependent meticillin-resistant Staphylococcus aureus: a potentially unrecognized reservoir of MRSA in hospital patients?	2006
Dr John Perry	Differentiation of vancomycin-resistant enterococci using enterococcus differential medium	2005
Dr John Perry	Endocarditis guidelines: authors' response	2005
Dr John Perry Professor Kate Gould	Development and evaluation of a chromogenic agar medium for methicillin-resistant Staphylococcus aureus	2004
Dr John Perry Professor Kate Gould	Evaluation of novel beta-ribosidase substrates for the differentiation of Gram-negative bacteria	2004
Professor Kate Gould Dr John Perry	Guidelines for the antibiotic treatment of endocarditis in adults: report of the Working Party of the British Society for Antimicrobial Chemotherapy	2004
Amanda Jones Dr John Perry Professor Michael Goodfellow	Rhodococcus gordoniae sp. nov., an actinomycete isolated from clinical material and phenol-contaminated soil	2004
Dr John Perry	Routine use of a commercial test, GLABRATA RTT, for rapid identification of Candida glabrata in six laboratories	2004
Dr John Perry Professor Kate Gould Dr David Spencer	Comparison of lung deposition of colomycin using the HaloLite and the Pari LC Plus nebulisers in patients with cystic fibrosis	2003
Dr John Perry Dr Katherine Orr	Evaluation of a new chromogenic medium, Uriselect 4, for the isolation and identification of urinary tract pathogens	2003
Neil Hamilton Amanda Jones Dr John Perry	Evaluation of a new water treatment for point-of-use household applications to remove microorganisms and arsenic from drinking water	2003
Dr John Perry Professor Kate Gould	Evaluation of S-aureus ID, a new chromogenic agar medium for detection of Staphylococcus aureus	2003
Dr John Perry Jennifer Wilson	Management and outcome of bloodstream infections due to Candida species in England and Wales	2003
Dr John Perry Dr Alfred Jones Professor Andrew McCaskie	Mechanical prophylaxis: Bacterial colonisation and sterilisation	2003
Dr Steven Powell Dr John Perry Dr David Meikle	Microbial contamination of non-disposable instruments in otolaryngology out-patients	2003
Dr John Perry	Routine use of a one minute trehalase and maltase test for the identification of Candida glabrata in four laboratories	2003
Dr John Perry Dr Katherine Orr	A novel selective medium for the detection of methicillin-resistant Staphylococcus aureus enabling result reporting in under 24 h	2002
Dr John Perry Professor John Dark Professor Kate Gould	Activity of disinfectants against gram-negative bacilli isolated from patients undergoing lung transplantation for cystic fibrosis	2002
Dr John Perry Professor Kate Gould	Alafosfalin as a selective agent for isolation of Salmonella from clinical samples	2002
Dr John Perry Professor Kate Gould	Evidence for antibiotic induced Clostridium perfringens diarrhoea	2002
Dr Katherine Orr Amanda Jones Ian Robson Dr John Perry	Survival of enterococci during hospital laundry processing	2002
Dr Andrew Berrington Dr John Perry	Bactericidal activity of moxifloxacin against Staphylococcus aureus	2001
Dr John Perry Professor Kate Gould	Fluorogenic substrates for the detection of microbial nitroreductases	2001
Dr John Perry	Synthesis and evaluation of novel fluorogenic substrates for the detection of bacterial beta-galactosidase	2001
Dr Andrew Berrington Dr Roland Koerner Dr John Perry Dr Hugh Bain Professor Kate Gould et al.	Treatment of Staphylococcus aureus endocarditis using moxifloxacin	2001
Dr John Perry Dr Katherine Orr	Alizarin-beta-D-galactoside: a new substrate for the detection of bacterial beta-galactosidase	2000
Dr John Perry Professor Lyle Armstrong Professor Kate Gould	Evaluation of p-naphtholbenzein-beta-D-galactoside as a substrate for bacterial beta-galactosidase	2000
Dr John Perry Amanda Jones Professor Kate Gould	ABC Medium, a New Chromogenic Agar for Selective Isolation of Salmonella spp.	1999
Dr John Perry Professor Kate Gould	Disc susceptibility testing of staphylococci-implications for the BSAC standardized method	1999
Dr John Perry Sheila Morgan Dr Katherine Orr Professor Kate Gould	Evaluation of tube coagulase and a fluorogenic substrate for rapid detection of methicillin-resistant Staphylococcus aureus from selective enrichment broth in an outbreak of EMRSA 15	1999
Dr John Perry Amanda Jones Professor Kate Gould	Glycopeptide tolerance in bacteria causing endocarditis	1999
Dr John Perry	Phototoxicity of Rose Bengal in mycological media - implications for laboratory practice	1999
Dr John Perry Professor Kate Gould	Rapid identification of Staphylococcus aureus by using fluorescent staphylocoagulase assays	1999
Dr John Perry Professor Kate Gould	Should clindamycin be used as treatment of patients with infections caused by erythromycin-resistant staphylococci?	1999