Publications by Professor Anil Wipat - ePrints

Browsing publications by Professor Anil Wipat.

Newcastle Authors	Title	Year
Christian Atallah Atallah Dr Katherine James Zhen Ou Dr James Skelton David Markham et al.	A method for the systematic selection of enzyme panel candidates by solving the maximum diversity problem	2024
Dr Helen Mitrani Professor Anil Wipat Dr Polly Moreland	A Numerical Bio-Geotechnical Model of Pressure-Responsive Microbially Induced Calcium Carbonate Precipitation	2024
Dr Christopher Johnson Matthew Setterfield Professor Anil Wipat Dr Matthew Pocock Dr Neil Keegan et al.	Multiplex detection of the big five carbapenemase genes using solid-phase recombinase polymerase amplification	2024
Dr Yiming Huang Professor Anil Wipat Professor Jaume Bacardit	Transcriptional biomarker discovery toward building a load stress reporting system for engineered Escherichia coli strains	2024
Dr Yiming Huang Professor Anil Wipat Professor Jaume Bacardit	A knowledge integration strategy for the selection of a robust multi-stress biomarkers panel for Bacillus subtilis	2023
Dr Matthew Crowther Professor Anil Wipat Dr Angel Goni-Moreno	GENETTA: a Network-Based Tool for the Analysis of Complex Genetic Designs	2023
Dr James Skelton Dr Elisa Anastasi Professor Anil Wipat	Lacking mechanistic disease definitions and corresponding association data hamper progress in network medicine and beyond	2023
Dr Matthew Crowther Professor Anil Wipat Dr Angel Goni-Moreno	A Network Approach to Genetic Circuit Designs	2022
Valeria Verrone Professor Anil Wipat	A novel method for transforming Geobacillus kaustophilus with a chromosomal segment of Bacillus subtilis transferred via pLS20-dependent conjugation	2022
Christian Atallah Dr Katherine James Zhen Ou David Markham Professor Anil Wipat et al.	Automatic Diverse Subset Selection From Enzyme Families by Solving the Maximum Diversity Problem	2022
Dr Katherine James Professor Anil Wipat Dr Simon Cockell	Expanding Interactome Analyses beyond Model Eukaryotes	2022
Dr Katherine James Aoesha Alsobhe Dr Simon Cockell Professor Anil Wipat Dr Matthew Pocock et al.	Integration of probabilistic functional networks without an external Gold Standard	2022
Dr Goksel Misirli Professor Anil Wipat Dr Jennifer Hallinan	Modelling the fitness landscapes of a SCRaMbLEd yeast genome	2022
Dr Alex Ling Professor Anil Wipat	More Than Meets the Kappa for Antibody Superantigen Protein L (PpL)	2022
Valeria Verrone Professor Anil Wipat	Assessment of Bacillus subtilis plasmid pLS20 conjugation in the absence of quorum sensing repression	2021
Dr Yiming Huang Dr Wendy Smith Professor Colin Harwood Professor Anil Wipat Professor Jaume Bacardit et al.	Computational Strategies for the Identification of a Transcriptional Biomarker Panel to Sense Cellular Growth States in Bacillus subtilis	2021
Dr Harold Fellermann Dr Bradley Brown Professor Anil Wipat Professor Natalio Krasnogor	Toward Full-Stack In Silico Synthetic Biology: Integrating Model Specification, Simulation, Verification, and Biological Compilation	2021
Professor Anil Wipat	Virtual Parts Repository 2: Model-Driven Design of Genetic Regulatory Circuits	2021
Dr Bradley Brown Jasmine Bird Dr Angel Goni-Moreno James Alastair McLaughlin McLaughlin Dr Goksel Misirli et al.	Capturing Multicellular System Designs Using Synthetic Biology Open Language (SBOL)	2020
Dr Sven Lahme Dr Lucy Eland Professor Anil Wipat Professor Ian Head Professor Casey Hubert et al.	Comparison of sulfide-oxidizing Sulfurimonas strains reveals a new mode of thiosulfate formation in subsurface environments	2020
Dr Alex Ling Dr Yuen Ling Ng Professor Anil Wipat	Essentially Leading Antibody Production: An Investigation of Amino Acids, Myeloma, and Natural V-Region Signal Peptides in Producing Pertuzumab and Trastuzumab Variants	2020
Dr Ling Juan Wu Dr Seoungjun Lee Sungshic Park Dr Lucy Eland Professor Anil Wipat et al.	Geometric principles underlying the proliferation of a model cell system	2020
Dr Saikat Jana Sam Charlton Dr Lucy Eland Professor Grant Burgess Professor Anil Wipat et al.	Nonlinear rheological characteristics of single species bacterial biofilms	2020
Dr Elisa Anastasi Professor Anil Wipat	NOX5-induced uncoupling of endothelial NO synthase is a causal mechanism and theragnostic target of an age-related hypertension endotype	2020
James Alastair McLaughlin McLaughlin Dr Matthew Crowther Professor Anil Wipat	Synthetic biology open language (SBOL) version 3.0.0	2020
James Alastair McLaughlin McLaughlin Dr Goksel Misirli Dr Matthew Pocock Professor Anil Wipat Professor Christopher Myers et al.	Synthetic biology open language visual (SBOL visual) version 2.2	2020
Professor Anil Wipat	The gene-rich genome of the scallop Pecten maximus	2020
Dr Alex Ling Dr Yuen Ling Ng Professor Anil Wipat	The Quantification of Antibody Elements and Receptors Subunit Expression Using qPCR: The Design of VH, VL, CH, CL, FcR Subunits Primers for a More Holistic View of the Immune System	2020
James Alastair McLaughlin McLaughlin Dr Goksel Misirli Professor Anil Wipat	The Synthetic Biology Open Language (SBOL) Version 3: Simplified Data Exchange for Bioengineering	2020
Dr Angel Goni-Moreno James Alastair McLaughlin McLaughlin Dr Curtis Madsen Dr Matthew Pocock Zach Zundel et al.	Communicating Structure and Function in Synthetic Biology Diagrams	2019
Dr Jennifer Hallinan Professor Anil Wipat Emeritus Professor Simon Woods Dr Kenneth Taylor Dr Angel Goni-Moreno et al.	Future-Proofing Synthetic Biology: Educating the Next Generation	2019
Dr Goksel Misirli Professor Anil Wipat	Harmonizing semantic annotations for computational models in biology	2019
Dr Michael White Dr Saikat Jana Dr Lucy Eland Dr Jinju Chen Professor Anil Wipat et al.	Regulating, Measuring, and Modeling the Viscoelasticity of Bacterial Biofilms	2019
James Alastair McLaughlin McLaughlin Christian Atallah Professor Anil Wipat	sboljs: Bringing the Synthetic Biology Open Language to the Web Browser	2019
Dr Goksel Misirli Dr Angel Goni-Moreno James Alastair McLaughlin McLaughlin Professor Christopher Myers Dr Phillip Lord et al.	SBOL-OWL: An Ontological Approach for Formal and Semantic Representation of Synthetic Biology Information	2019
Professor Anil Wipat	A Genetic Circuit Compiler: Generating Combinatorial Genetic Circuits with Web Semantics and Inference	2018
Dr Dave Houghton Professor Christopher Stewart Dr Craig Stamp Professor Anil Wipat Professor Mike Trenell et al.	Age-related mitochondrial dysfunction influences the mouse intestinal microbiome composition	2018
Professor Martyn Dade-Robertson Dr Helen Mitrani Dr Luis Hernandez-Hernandez Dr Aurelie Guyet Professor Anil Wipat et al.	Design and modelling of an engineered bacteria-based, pressure-sensitive soil.	2018
Dr Aurelie Guyet Professor Martyn Dade-Robertson Professor Anil Wipat John Casement Dr Wendy Smith et al.	Mild hydrostatic pressure triggers oxidative responses in Escherichia coli	2018
Dr Beth Lawry Dr Christopher Johnson Dr Keith Flanagan Julia Spoors Emeritus Professor Calum McNeil et al.	Species-specific detection of C. difficile using targeted antibody design	2018
James Alastair McLaughlin McLaughlin Professor Christopher Myers Zach Zundel Dr Goksel Misirli Dr Dana Ofiteru et al.	SynBioHub: A Standards-Enabled Design Repository for Synthetic Biology	2018
Professor Christopher Myers James Alastair McLaughlin McLaughlin Dr Goksel Misirli Professor Anil Wipat	A standard-enabled workflow for synthetic biology	2017
James Alastair McLaughlin McLaughlin Dr Goksel Misirli Zach Zundel Professor Anil Wipat	A synthetic biology workflow using SBOL	2017
James Alastair McLaughlin McLaughlin Professor Anil Wipat	A Visual Language for Protein Design	2017
Dr Angel Goni-Moreno Professor Anil Wipat Professor Natalio Krasnogor	CSBB: Synthetic biology research at Newcastle University	2017
Dr Rebeca Gonzalez-Cabaleiro Anca Mitchell Dr Wendy Smith Professor Anil Wipat Dr Dana Ofiteru et al.	Heterogeneity in pure microbial systems: Experimental measurements and modeling	2017
Dr Dave Houghton Professor Christopher Stewart Dr Craig Stamp Professor Anil Wipat Professor Mike Trenell et al.	Impact of Age-Related Mitochondrial Dysfunction and Exercise on Intestinal Microbiota Composition	2017
James Alastair McLaughlin McLaughlin Professor Anil Wipat Professor Christopher Myers	SBOLDesigner 2: An Intuitive Tool for Structural Genetic Design	2017
Professor Martyn Dade-Robertson Dr Aurelie Guyet Dr Helen Mitrani Professor Anil Wipat	Synthetic Biological Construction: Beyond 'bio-inspired' in the design of new materials and fabrication systems	2017
Joseph Mullen Dr Simon Cockell Professor Anil Wipat	An Integrated Data Driven Approach to Drug Repositioning Using Gene-Disease Associations	2016
Dr Goksel Misirli Dr Curtis Madsen Owen Gilfellon Dr Paolo Zuliani Professor Anil Wipat et al.	Annotation of rule-based models with formal semantics to enable creation, analysis, reuse and visualisation	2016
James Skelton Dr Jennifer Hallinan Sunny Park Professor Anil Wipat	Computational intelligence for metabolic pathway design: Application to the pentose phosphate pathway	2016
Dr Goksel Misirli Dr Jennifer Hallinan Dr Phillip Lord James Alastair McLaughlin McLaughlin Professor Anil Wipat et al.	Data Integration and Mining for Synthetic Biology Design	2016
Professor Anil Wipat Dr Jennifer Hallinan	Engineering bacterial populations for pattern formation	2016
Dr Goksel Misirli Zach Zundel Professor Anil Wipat Professor Christopher Myers	libSBOLj 2.0: A Java Library to Support SBOL 2.0	2016
Dr Lucy Eland Professor Anil Wipat Dr Seoungjun Lee Sungshic Park Dr Ling Juan Wu et al.	Microfluidics for bacterial imaging	2016
Joseph Mullen Dr Simon Cockell Professor Anil Wipat	Mining integrated semantic networks for drug repositioning opportunities	2016
Dr Goksel Misirli Dr Curtis Madsen Professor Anil Wipat	Sharing Structure and Function in Biological Design with SBOL 2.0	2016
Professor Martyn Dade-Robertson Javier Rodriguez Corral Dr Aurelie Guyet Dr Helen Mitrani Professor Anil Wipat et al.	Synthetic Biological Construction: Beyond ‘bio-inspired’ in the design of new materials and fabrication systems	2016
Dr Curtis Madsen James Alastair McLaughlin McLaughlin Dr Goksel Misirli Dr Keith Flanagan Dr Jennifer Hallinan et al.	The SBOL Stack: A Platform for Storing, Publishing, and Sharing Synthetic Biology Designs	2016
Professor Martyn Dade-Robertson Dr Helen Mitrani Professor Anil Wipat Carolina Ramirez-Figueroa Dr Luis Hernandez-Hernandez et al.	Thinking Soils: A Synthetic Biology approach to material based design computation	2016
James Alastair McLaughlin McLaughlin Dr Goksel Misirli Dr Curtis Madsen Professor Anil Wipat	VisBOL: Web-Based Tools for Synthetic Biology Design Visualization	2016
Dr Katherine James Shereen Al-Ali Dr Jessica Tarn Dr Simon Cockell Dr Colin Gillespie et al.	A Transcriptional Signature of Fatigue Derived from Patients with Primary Sjögren’s Syndrome	2015
Jessica Tarn Dr Simon Cockell Dr Colin Gillespie Emerita Professor Julia Newton Professor Anil Wipat et al.	A Transcriptional Signature of Fatigue Derived from Patients with Primary Sjögren's Syndrome	2015
Professor Caroline Relton Professor Anil Wipat Dr Keith Flanagan Dr Allyson Lister	Data Resource Profile: Accessible Resource for Integrated Epigenomic Studies (ARIES)	2015
Shereen Al-Ali Dr Jessica Tarn Dr Simon Cockell Dr Colin Gillespie Professor John Isaacs et al.	Gene Set Enrichment Analysis Across Multiple Expression Studies Reveals a Core Subset of Primary Sjögren's Syndrome-Related Genes	2015
Professor Fai Ng Professor Anil Wipat Dr Jennifer Hallinan	Integrative Network-Based Analysis of the Primary Sjogren's Syndrome Transcriptome between Human and Mouse	2015
Dr Matthew Pocock Dr Curtis Madsen Dr Goksel Misirli Professor Anil Wipat	Proposed Data Model for the Next Version of the Synthetic Biology Open Language	2015
James Alastair McLaughlin McLaughlin Professor Anil Wipat	SBOL Visual: A Graphical Language for Genetic Designs	2015
Dr Keith Flanagan Dr Simon Cockell Professor Colin Harwood Dr Jennifer Hallinan Dr Sirintra Nakjang et al.	A distributed computational search strategy for the identification of diagnostics targets: Application to finding aptamer targets for methicillin-resistant staphylococci	2014
Dr Goksel Misirli Dr Jennifer Hallinan Professor Anil Wipat	BacillusRegnet: a transcriptional regulation database and analysis platform for Bacillus species	2014
Dr Goksel Misirli Dr Jennifer Hallinan Professor Anil Wipat	Composable Modular Models for Synthetic Biology	2014
Dr Goksel Misirli Dr Jennifer Hallinan Professor Anil Wipat	Composable modular models for synthetic biology	2014
Andy Best Caroline Dalgliesh Elaine Hong Mahsa Kheirollahi Kouhestani Dr Yaobo Xu et al.	Human Tra2 proteins jointly control a CHEK1 splicing switch among alternative and constitutive target exons	2014
Professor Anil Wipat	Introduction to the Special Issue on Computational Synthetic Biology	2014
Julija Rusakovica Dr Jennifer Hallinan Professor Anil Wipat Dr Paolo Zuliani	Probabilistic Latent Semantic Analysis Applied to Whole Bacterial Genomes Identifies Common Genomic Features	2014
Dr Matthew Pocock Dr Jennifer Hallinan Dr Goksel Misirli Professor Anil Wipat	The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology	2014
Dr Jennifer Hallinan Owen Gilfellon Dr Goksel Misirli Professor Anil Wipat	Tuning Receiver Characteristics in Bacterial Quorum Communication: An Evolutionary Approach Using Standard Virtual Biological Parts	2014
Professor Colin Harwood Dr Susanne Pohl Dr Wendy Smith Professor Anil Wipat	Bacillus subtilis: Model Gram-Positive Synthetic Biology Chassis	2013
Dr Goksel Misirli Professor Anil Wipat Joseph Mullen Dr Katherine James Dr Matthew Pocock et al.	BacillOndex: An Integrated Data Resource for Systems and Synthetic Biology	2013
Dr Susanne Pohl John Hulme Dr Goksel Misirli Dr David Radford Dr Wayne Smith et al.	Proteomic analysis of Bacillus subtilis strains engineered for improved production of heterologous proteins	2013
Dr Sirintra Nakjang Dr Didier Ndeh Professor Anil Wipat Dr David Bolam Professor Robert Hirt et al.	A Novel Extracellular Metallopeptidase Domain Shared by Animal Host-Associated Mutualistic and Pathogenic Microbes	2012
Jochen Weile Dr Katherine James Dr Jennifer Hallinan Dr Simon Cockell Dr Phillip Lord et al.	Bayesian integration of networks without gold standards	2012
Dr Jennifer Hallinan Sungshic Park Professor Anil Wipat	Bridging the Gap Between Design and Reality: A Dual Evolutionary Strategy for the Design of Synthetic Genetic Circuits	2012
Matt Collison Professor Robert Hirt Professor Anil Wipat Dr Sirintra Nakjang	Data mining the human gut microbiota for therapeutic targets	2012
Dr Katherine James Professor Anil Wipat Dr Jennifer Hallinan	Is newer better?-evaluating the effects of data curation on integrated analyses in Saccharomyces cerevisiae	2012
Dr Keith Flanagan Dr Sirintra Nakjang Dr Jennifer Hallinan Professor Colin Harwood Professor Robert Hirt et al.	Microbase2.0: a generic framework for computationally intensive bioinformatics workflows in the cloud	2012
Professor Colin Harwood Professor Anil Wipat	Systems Biology of Bacteria	2012
Dr Sophie Weatherhead Professor Peter Farr Dr David Jamieson Dr Jennifer Hallinan Dr James Lloyd et al.	Apoptosis of keratinocytes is a key mechanism in UVB-induced clearance of psoriasis	2011
Dr Sirintra Nakjang Professor Robert Hirt Professor Anil Wipat	Automatic extraction of microorganisms and their habitats from free text using text mining workflows	2011
Dr Goksel Misirli Dr Jennifer Hallinan Dr Matthew Pocock Dr Simon Cockell Jochen Weile et al.	BacillOndex: An Integrated Data Resource for Systems and Synthetic Biology	2011
Jochen Weile Dr Matthew Pocock Dr Simon Cockell Dr Phillip Lord James Dewar et al.	Customizable views on semantically integrated networks for systems biology	2011
Dr Hsin Yu Chang Dr Conor Lawless Dr Stephen Addinall Morgan Taschuk Professor Anil Wipat et al.	Genome-Wide Analysis to Identify Pathways Affecting Telomere-Initiated Senescence in Budding Yeast	2011
Dr Sophie Weatherhead Professor Peter Farr Dr David Jamieson Dr Jennifer Hallinan Dr James Lloyd et al.	Keratinocyte Apoptosis in Epidermal Remodeling and Clearance of Psoriasis Induced by UV Radiation	2011
Dr Goksel Misirli Dr Jennifer Hallinan Professor Anil Wipat	Model annotation for synthetic biology: automating model to nucleotide sequence conversion	2011
Dr Katherine James Professor Anil Wipat Dr Jennifer Hallinan	Multiple Gold Standards Address Bias in Functional Network Integration	2011
Dr Jennifer Hallinan Dr Katherine James Professor Anil Wipat	Network Approaches to the Functional Analysis of Microbial Proteins	2011
Dr Stephen Addinall Dr Eva-Maria Holstein Dr Conor Lawless Dr Min Yu Dr Kaye Chapman et al.	Quantitative Fitness Analysis Shows That NMD Proteins and Many Other Protein Complexes Suppress or Enhance Distinct Telomere Cap Defects	2011
Dr Simon Cockell Professor Anil Wipat Professor Colin Harwood Dr Neil Keegan	Structure-function studies of an engineered scaffold protein derived from Stefin A. II: Development and applications of the SQT variant.	2011
Dr Curtis Madsen Dr Goksel Misirli Professor Anil Wipat	Synthetic Biology Open Language (SBOL) Version 1.0.0	2011
Dr Simon Cockell Jochen Weile Dr Phillip Lord Dmytro Andriychenko Dr Matthew Pocock et al.	An integrated dataset for in silico drug discovery	2010
Dr Sophie Weatherhead Professor Peter Farr Dr Jennifer Hallinan Professor Anil Wipat Professor Nick Reynolds et al.	Development of a dynamic mathematical model of epidermis reveals critical importance of increasing the proportion of both cycling stem and transient amplifying cells, in the development of psoriatic plaques	2010
Dr Jennifer Hallinan Dr Goksel Misirli Professor Anil Wipat	Evolutionary computation for the design of a stochastic switch for synthetic genetic circuits	2010
Dr Joao Passos Dr Glyn Nelson Dr Cedric Simillion Dr Carole Proctor Dr Satomi Miwa et al.	Feedback between p21 and reactive oxygen production is necessary for cell senescence	2010
Dr Goksel Misirli Dr Jennifer Hallinan Professor Anil Wipat	Standard virtual biological parts: a repository of modular modeling components for synthetic biology	2010
Professor Anil Wipat	The Gel Electrophoresis Markup Language (GelML) from the Proteomics Standards Initiative	2010
Dr Allyson Lister Dr Phillip Lord Dr Matthew Pocock Professor Anil Wipat	Annotation of SBML Models Through Rule-Based Semantic Integration	2009
Dr Joao Passos Dr Cedric Simillion Dr Jennifer Hallinan Professor Anil Wipat Professor Thomas von Zglinicki et al.	Cellular senescence: Unravelling complexity	2009
Dr Jennifer Hallinan Dr Matthew Pocock Dr Stephen Addinall Professor David Lydall Professor Anil Wipat et al.	Clustering incorporating shortest paths identifies relevant modules in functional interaction networks	2009
Dr Katherine James Professor Anil Wipat Dr Jennifer Hallinan	Integration of full-coverage probabilistic functional networks with relevance to specific biological processes	2009
Dr Katherine James Professor Anil Wipat Dr Jennifer Hallinan	Integration of full-coverage probabilistic functional networks with relevance to specific biological processes	2009
Dr Allyson Lister Dr Frank Gibson Dr Phillip Lord Dr Matthew Pocock Professor Anil Wipat et al.	Modeling and Managing Experimental Data Using FuGE	2009
Dr Allyson Lister Dr Matthew Pocock Morgan Taschuk Professor Anil Wipat	Saint: A Lightweight Integration Environment for Model Annotation	2009
Dr Allyson Lister Dr Matthew Pocock Professor Anil Wipat	Saint: a lightweight SBML annotation integration environment	2009
Dr Amanda Greenall Dr Daniel Swan Dr Heiko Peters Professor Anil Wipat Professor Darren Wilkinson et al.	A genome wide analysis of the response to uncapped telomeres in budding yeast reveals a novel role for the NAD(+) biosynthetic gene BNA2 in chromosome end protection	2008
Dr Stephen Addinall Dawn Downey Dr Min Yu Dr Mikhajlo Zubko James Dewar et al.	A Genome-wide Suppressor and Enhancer Analysis of cdc13-1 Reveals Varied Cellular Processes Influencing Telomere Capping in Saccharomyces cerevisiae	2008
Tracy Craddock Professor Colin Harwood Dr Jennifer Hallinan Professor Anil Wipat	e-Science: relieving bottlenecks in large-scale genome analyses	2008
Dr Nick Morris Professor Anil Wipat	Guidelines for reporting the use of gel electrophoresis in proteomics	2008
Dr Jennifer Hallinan Professor Anil Wipat	Network Motifs in Context: An Exploration of the Evolution of Oscillatory Dynamics in Transcriptional Networks	2008
Dr Allyson Lister Dr Phillip Lord Dr Alison Spiers Professor Anil Wipat	The minimum information about a genome sequence (MIGS) specification	2008
Professor Anil Wipat Dr Matthew Pocock Professor Pete Lee Dr Keith Flanagan James Worthington et al.	Exploring microbial genome sequences to identify protein families on the grid	2007
Dr Allyson Lister Dr Matthew Pocock Dr Oliver Shaw Professor Anil Wipat	Implementing the FuGE Object Model: a Systems Biology Data Portal and Integrator	2007
Dr Allyson Lister Dr Matthew Pocock Professor Anil Wipat	Integration of constraints documented in SBML, SBO, and the SBML Manual facilitates validation of biological models	2007
Dr Allyson Lister Dr Matthew Pocock Professor Anil Wipat	Integration of constraints documented in SBML, SBO, and the SBML Manual facilitates validation of biological models	2007
Dr Jennifer Hallinan Professor Anil Wipat	Motifs and modules in fractured functional yeast networks	2007
Dr Jason Steggles Dr Oliver Shaw Professor Anil Wipat	Qualitatively modelling and analysing genetic regulatory networks: A Petri net approach	2007
Dr Jason Steggles Professor Anil Wipat	Automatic Parameterisation of Stochastic Petri Net Models of Biological Networks	2006
Dr Jennifer Hallinan Professor Anil Wipat	Clustering and cross-talk in a yeast functional interaction network	2006
Tracy Craddock Dr Phillip Lord Professor Colin Harwood Professor Anil Wipat	e-science tools for the genomic scale characterisation of bacterial secreted proteins	2006
Dr Frank Gibson Professor Anil Wipat Dr Matthew Pocock Dr Nick Morris	GELI: a data model for the representation of a gel electrophoresis experiment	2006
Dr Jason Steggles Richard Banks Professor Anil Wipat	Modelling and Analysing Genetic Networks: From Boolean Networks to Petri Nets	2006
Dr Jason Steggles Richard Banks Professor Anil Wipat	Modelling and analysing genetic networks: From Boolean networks to Petri nets	2006
Dr Nicholas Allenby Dr Carys Watts Dr Georg Homuth Dr Zoltan Pragai Professor Anil Wipat et al.	Phosphate starvation induces the sporulation killing factor of Bacillus subtilis	2006
Dr Peter Li Dr Phillip Lord Dr Matthew Pocock Professor Anil Wipat	Taverna: lessons in creating a workflow environment for the life sciences	2006
Professor Anil Wipat Dr Matthew Pocock Professor Pete Lee Professor Paul Watson Dr Keith Flanagan et al.	A grid-based system for microbial genome comparison and analysis	2005
Oliver Shaw Dr Jason Steggles Professor Anil Wipat	Automatic Parameterisation of Stochastic Petri Net Models of Biological Networks	2005
Oliver Shaw Dr Jason Steggles Professor Anil Wipat	Automatic Parameterisation of Stochastic Petri Net Models of Biological Networks	2005
Dr Yudong Sun Professor Anil Wipat Dr Matthew Pocock Professor Pete Lee Dr Keith Flanagan et al.	Exploring Microbial Genome Sequences to Identify Protein Families on the Grid	2005
Dr Nicholas Allenby Nicola O'Connor Dr Zoltan Pragai Emeritus Professor Alan Ward Professor Anil Wipat et al.	Genome-wide transcriptional analysis of the phosphate starvation stimulon of Bacillus subtilis	2005
Rachel Williams Professor Anil Wipat Professor Colin Harwood	The extracellular and cytoplasmic proteomes of the non-virulent Bacillus anthracis strain UM23C1-2	2005
Dr Yudong Sun Professor Anil Wipat Dr Matthew Pocock Professor Pete Lee Professor Paul Watson et al.	A Grid-based System for Microbial Genome Comparison and Analysis	2004
Oliver Shaw Dr Albert Koelmans Dr Jason Steggles Professor Anil Wipat	Applying Petri Nets to Systems Biology using XML Technologies	2004
Oliver Shaw Dr Albert Koelmans Dr Jason Steggles Professor Anil Wipat	Applying Petri Nets to Systems Biology using XMLTechnologies	2004
Dr Peter Li Keith Hayward Dr Claire Jennings Professor Anil Wipat	Association of variations in I kappa B-epsilon with Graves’ disease using classical and myGrid methodologies	2004
Professor Anil Wipat Dr Peter Li	Delivering Web service coordination capability to users	2004
Professor Anil Wipat Dr Yudong Sun Dr Matthew Pocock Professor Pete Lee Professor Paul Watson et al.	Developing Grid-based Systems for Microbial Genome	2004
Professor Anil Wipat Dr Peter Li	myGrid and the drug discovery process	2004
Dr Keith Flanagan Dr Matthew Pocock Professor Pete Lee Professor Anil Wipat	Ontology for genome comparison and genomic rearrangements	2004
Dr Nicholas Allenby Nicola O'Connor Dr Zoltan Pragai Dr Noel Carter Professor Anil Wipat et al.	Post-transcriptional regulation of the Bacillus subtilis pst operon encoding a phosphate-specific ABC transporter	2004
Dr Oliver Shaw Professor Colin Harwood Dr Jason Steggles Professor Anil Wipat	SARGE: A tool for creation of putative genetic networks	2004
Dr Matthew Pocock Professor Anil Wipat Dr Peter Li	Taverna: A tool for the composition and enactment of bioinformatics workflows	2004
Dr Sierd Bron Professor Jeff Errington Professor Colin Harwood Dr Zoltan Pragai Professor Anil Wipat et al.	Essential Bacillus subtilis genes	2003
Dr Peter Li Professor Anil Wipat	Experiences with e-Science workflow specification and enactment in bioinformatics	2003
Professor Colin Harwood Professor Anil Wipat Dr Zoltan Pragai	Functional analysis of the Bacillus subtilis genome	2003
Professor Colin Harwood Professor Anil Wipat	Bacterial protein synthesis	2002
Professor Colin Harwood Professor Anil Wipat Dr Zoltan Pragai	Functional analysis of the Bacillus subtilis genome	2002
Professor Colin Harwood Samuel Crawshaw Professor Anil Wipat	From genome to function: Systematic analysis of the soil bacterium Bacillus subtilis	2001
Professor Colin Harwood Professor Anil Wipat	Genome management and analysis: prokaryotes	2001
Professor Anil Wipat Professor Colin Harwood	The Bacillus subtilis genome sequence: The molecular blueprint of a soil bacterium	1999
Professor Anil Wipat Jane Guy Professor Peter Emmerson Professor Colin Harwood	The yvsA-yvqA (293°-289°) region of the Bacillus subtilis chromosome containing genes involved in metal ion uptake and a putative sigma factor	1998
Professor Anil Wipat Dr Zoltan Pragai Jane Guy Professor Colin Harwood	A putative DNA repair operon in B. subtilis comprising a gene encoding a DNA repair polymerase, a routs homolog and an unidentified	1997
Professor Anil Wipat Dr Noel Carter Professor Peter Emmerson Professor Colin Harwood	An internal FK506-binding domain is the catalytic core of the prolyl isomerase activity associated with the Bacillus subtilis trigger factor	1997
Professor Anil Wipat Professor Colin Harwood Professor Peter Emmerson	Sequence and transcriptional analysis of clpX, a class-III heat-shock gene of Bacillus subtilis	1996
Professor Colin Harwood Professor Anil Wipat	Sequencing and functional analysis of the genome of Bacillus subtilis strain 168	1996
Professor Anil Wipat Jane Guy Dr Karen Piper Hanley Professor Peter Emmerson Professor Colin Harwood et al.	The dnaB-pheA (256°-240°) region of the Bacillus subtilis chromosome containing genes responsible for stress responses, the utilization of plant cell walls and primary metabolism	1996
Professor Anil Wipat	Monoclonal antibodies for Streptomyces lividans and their use for immunomagnetic capture of spores from soil	1994
Professor Anil Wipat	Detection of Streptomyces marker plasmids in soil	1992
Professor Anil Wipat	Detection systems for streptomycetes	1992
Professor Anil Wipat	Streptomyces marker plasmids for monitoring survival and spread of streptomycetes in soil	1991
Professor Anil Wipat	Gene transfer between streptomycetes in soil	1990
Professor Anil Wipat	Plasmid transfer between streptomycetes in soil	1988