Publications by Dr Goksel Misirli - ePrints

Browsing publications by Dr Goksel Misirli.

Newcastle Authors	Title	Year
Dr Goksel Misirli Professor Anil Wipat Dr Jennifer Hallinan	Modelling the fitness landscapes of a SCRaMbLEd yeast genome	2022
Dr Bradley Brown Jasmine Bird Dr Angel Goni-Moreno James Alastair McLaughlin McLaughlin Dr Goksel Misirli et al.	Capturing Multicellular System Designs Using Synthetic Biology Open Language (SBOL)	2020
James Alastair McLaughlin McLaughlin Dr Goksel Misirli Dr Matthew Pocock Professor Anil Wipat Professor Christopher Myers et al.	Synthetic biology open language visual (SBOL visual) version 2.2	2020
James Alastair McLaughlin McLaughlin Dr Goksel Misirli Professor Anil Wipat	The Synthetic Biology Open Language (SBOL) Version 3: Simplified Data Exchange for Bioengineering	2020
Dr Goksel Misirli Professor Anil Wipat	Harmonizing semantic annotations for computational models in biology	2019
Dr Goksel Misirli Dr Angel Goni-Moreno James Alastair McLaughlin McLaughlin Professor Christopher Myers Dr Phillip Lord et al.	SBOL-OWL: An Ontological Approach for Formal and Semantic Representation of Synthetic Biology Information	2019
James Alastair McLaughlin McLaughlin Professor Christopher Myers Zach Zundel Dr Goksel Misirli Dr Dana Ofiteru et al.	SynBioHub: A Standards-Enabled Design Repository for Synthetic Biology	2018
Professor Christopher Myers James Alastair McLaughlin McLaughlin Dr Goksel Misirli Professor Anil Wipat	A standard-enabled workflow for synthetic biology	2017
James Alastair McLaughlin McLaughlin Dr Goksel Misirli Zach Zundel Professor Anil Wipat	A synthetic biology workflow using SBOL	2017
Dr Goksel Misirli Dr Phillip Lord	Tawny-SBOL: Using ontologies to design and constrain genetic circuits	2017
Dr Goksel Misirli Dr Curtis Madsen Owen Gilfellon Dr Paolo Zuliani Professor Anil Wipat et al.	Annotation of rule-based models with formal semantics to enable creation, analysis, reuse and visualisation	2016
Dr Goksel Misirli Dr Jennifer Hallinan Dr Phillip Lord James Alastair McLaughlin McLaughlin Professor Anil Wipat et al.	Data Integration and Mining for Synthetic Biology Design	2016
Dr Goksel Misirli Zach Zundel Professor Anil Wipat Professor Christopher Myers	libSBOLj 2.0: A Java Library to Support SBOL 2.0	2016
Dr Goksel Misirli Dr Curtis Madsen Professor Anil Wipat	Sharing Structure and Function in Biological Design with SBOL 2.0	2016
Dr Curtis Madsen James Alastair McLaughlin McLaughlin Dr Goksel Misirli Dr Keith Flanagan Dr Jennifer Hallinan et al.	The SBOL Stack: A Platform for Storing, Publishing, and Sharing Synthetic Biology Designs	2016
James Alastair McLaughlin McLaughlin Dr Goksel Misirli Dr Curtis Madsen Professor Anil Wipat	VisBOL: Web-Based Tools for Synthetic Biology Design Visualization	2016
Dr Matthew Pocock Dr Curtis Madsen Dr Goksel Misirli Professor Anil Wipat	Proposed Data Model for the Next Version of the Synthetic Biology Open Language	2015
Dr Goksel Misirli Dr Matthew Pocock	The Synthetic Biology Open Language	2015
Dr Goksel Misirli Dr Jennifer Hallinan Professor Anil Wipat	BacillusRegnet: a transcriptional regulation database and analysis platform for Bacillus species	2014
Dr Goksel Misirli Dr Jennifer Hallinan Professor Anil Wipat	Composable Modular Models for Synthetic Biology	2014
Dr Goksel Misirli Dr Jennifer Hallinan Professor Anil Wipat	Composable modular models for synthetic biology	2014
Dr Matthew Pocock Dr Jennifer Hallinan Dr Goksel Misirli Professor Anil Wipat	The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology	2014
Dr Jennifer Hallinan Owen Gilfellon Dr Goksel Misirli Professor Anil Wipat	Tuning Receiver Characteristics in Bacterial Quorum Communication: An Evolutionary Approach Using Standard Virtual Biological Parts	2014
Dr Goksel Misirli Professor Anil Wipat Joseph Mullen Dr Katherine James Dr Matthew Pocock et al.	BacillOndex: An Integrated Data Resource for Systems and Synthetic Biology	2013
Dr Susanne Pohl John Hulme Dr Goksel Misirli Dr David Radford Dr Wayne Smith et al.	Proteomic analysis of Bacillus subtilis strains engineered for improved production of heterologous proteins	2013
Dr Goksel Misirli Dr Jennifer Hallinan Dr Matthew Pocock Dr Simon Cockell Jochen Weile et al.	BacillOndex: An Integrated Data Resource for Systems and Synthetic Biology	2011
Dr Goksel Misirli Dr Jennifer Hallinan Professor Anil Wipat	Model annotation for synthetic biology: automating model to nucleotide sequence conversion	2011
Dr Goksel Misirli	SBML Level 3 Package Proposal: Annotation	2011
Dr Curtis Madsen Dr Goksel Misirli Professor Anil Wipat	Synthetic Biology Open Language (SBOL) Version 1.0.0	2011
Dr Jennifer Hallinan Dr Goksel Misirli Professor Anil Wipat	Evolutionary computation for the design of a stochastic switch for synthetic genetic circuits	2010
Dr Goksel Misirli Dr Jennifer Hallinan Professor Anil Wipat	Standard virtual biological parts: a repository of modular modeling components for synthetic biology	2010