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RNA Sequencing Reveals Candidate Genes and Pathways Associated with Resistance to MDM2 Antagonist Idasanutlin in TP53 Wild-Type Chronic Lymphocytic Leukemia

Lookup NU author(s): Erhan Aptullahoglu, Dr Sirintra Nakjang, Dr Jonathan Wallis, Dr Helen Marr, Dr Scott Marshall, Dr Elaine Willmore, Professor John LunecORCiD

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This work is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).


Abstract

© 2024 by the authors. Chronic lymphocytic leukemia (CLL) is a genetically and clinically diverse hematological cancer affecting middle-aged and elderly individuals. Novel targeted therapy options are needed for patients who relapse following initial responses or who are intrinsically resistant to current treatments. There is a growing body of investigation currently underway on MDM2 inhibitors in clinical trials, reflecting the increasing interest in including these drugs in cancer treatment regimens. One of the developed compounds, idasanutlin (RG7388), has shown promise in early-stage clinical trials. It is a second-generation MDM2–p53-binding antagonist with enhanced potency, selectivity, and bioavailability. In addition to the TP53 status, which is an important determinant of the response, we have shown in our previous studies that the SF3B1 mutational status is also an independent predictive biomarker of the ex vivo CLL patient sample treatment response to RG7388. The objective of this study was to identify novel biomarkers associated with resistance to RG7388. Gene set enrichment analysis of differentially expressed genes (DEGs) between RG7388-sensitive and -resistant CLL samples showed that the increased p53 activity led to upregulation of pro-apoptosis pathway genes while DNA damage response pathway genes were additionally upregulated in resistant samples. Furthermore, differential expression of certain genes was detected, which could serve as the backbone for novel combination treatment approaches. This research provides preclinical data to guide the exploration of drug combination strategies with MDM2 inhibitors, leading to future clinical trials and associated biomarkers that may improve outcomes for CLL patients.


Publication metadata

Author(s): Aptullahoglu E, Nakjang S, Wallis JP, Marr H, Marshall S, Willmore E, Lunec J

Publication type: Article

Publication status: Published

Journal: Biomedicines

Year: 2024

Volume: 12

Issue: 7

Online publication date: 22/06/2024

Acceptance date: 19/06/2024

Date deposited: 05/08/2024

ISSN (electronic): 2227-9059

Publisher: MDPI

URL: https://doi.org/10.3390/biomedicines12071388

DOI: 10.3390/biomedicines12071388

Data Access Statement: The data presented in this study and released under a CC-BY 4.0 license are available upon request from the corresponding authors.


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Funding

Funder referenceFunder name
13034Bloodwise (Formerly Leukaemia and Lymphoma Research)
Cancer Research UK (Awards #C2215/A21421)
JGW Paterson Foundation (grant #BH152495)
Newcastle Healthcare Charity (grant #BH152694)

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