Publications by Dr Matthew Pocock - ePrints

Browsing publications by Dr Matthew Pocock.

Newcastle Authors	Title	Year
Dr Christopher Johnson Matthew Setterfield Professor Anil Wipat Dr Matthew Pocock Dr Neil Keegan et al.	Multiplex detection of the big five carbapenemase genes using solid-phase recombinase polymerase amplification	2024
Dr Matthew Pocock Dr Curtis Madsen Dr Goksel Misirli Professor Anil Wipat	Proposed Data Model for the Next Version of the Synthetic Biology Open Language	2015
Dr Goksel Misirli Dr Matthew Pocock	The Synthetic Biology Open Language	2015
Dr Matthew Pocock Dr Jennifer Hallinan Dr Goksel Misirli Professor Anil Wipat	The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology	2014
Dr Goksel Misirli Professor Anil Wipat Joseph Mullen Dr Katherine James Dr Matthew Pocock et al.	BacillOndex: An Integrated Data Resource for Systems and Synthetic Biology	2013
Dr Keith Flanagan Dr Sirintra Nakjang Dr Jennifer Hallinan Professor Colin Harwood Professor Robert Hirt et al.	Microbase2.0: a generic framework for computationally intensive bioinformatics workflows in the cloud	2012
Dr Goksel Misirli Dr Jennifer Hallinan Dr Matthew Pocock Dr Simon Cockell Jochen Weile et al.	BacillOndex: An Integrated Data Resource for Systems and Synthetic Biology	2011
Dr Allyson Lister Dr Matthew Pocock Professor Darren Wilkinson	Controlled vocabularies and semantics in systems biology	2011
Dr Allyson Lister Dr Matthew Pocock Professor Darren Wilkinson	Controlled vocabularies and semantics in systems biology	2011
Jochen Weile Dr Matthew Pocock Dr Simon Cockell Dr Phillip Lord James Dewar et al.	Customizable views on semantically integrated networks for systems biology	2011
Dr Simon Cockell Jochen Weile Dr Phillip Lord Dmytro Andriychenko Dr Matthew Pocock et al.	An integrated dataset for in silico drug discovery	2010
Dr Allyson Lister Dr Phillip Lord Dr Matthew Pocock Professor Anil Wipat	Annotation of SBML Models Through Rule-Based Semantic Integration	2009
Dr Jennifer Hallinan Dr Matthew Pocock Dr Stephen Addinall Professor David Lydall Professor Anil Wipat et al.	Clustering incorporating shortest paths identifies relevant modules in functional interaction networks	2009
Dr Allyson Lister Dr Frank Gibson Dr Phillip Lord Dr Matthew Pocock Professor Anil Wipat et al.	Modeling and Managing Experimental Data Using FuGE	2009
Dr Phillip Lord Dr Allyson Lister Dr Matthew Pocock	Modeling biomedical experimental processes with OBI	2009
Dr Allyson Lister Dr Matthew Pocock Morgan Taschuk Professor Anil Wipat	Saint: A Lightweight Integration Environment for Model Annotation	2009
Dr Allyson Lister Dr Matthew Pocock Professor Anil Wipat	Saint: a lightweight SBML annotation integration environment	2009
Dr Matthew Pocock	BioJava: An open-source framework for bioinformatics	2008
Dr Matthew Pocock	Performing statistical analyses on quantitative data in Taverna workflows: An example using R and maxdBrowse to identify differentially-expressed genes from microarray data	2008
Professor Anil Wipat Dr Matthew Pocock Professor Pete Lee Dr Keith Flanagan James Worthington et al.	Exploring microbial genome sequences to identify protein families on the grid	2007
Dr Allyson Lister Dr Matthew Pocock Dr Oliver Shaw Professor Anil Wipat	Implementing the FuGE Object Model: a Systems Biology Data Portal and Integrator	2007
Dr Allyson Lister Dr Matthew Pocock Professor Anil Wipat	Integration of constraints documented in SBML, SBO, and the SBML Manual facilitates validation of biological models	2007
Dr Allyson Lister Dr Matthew Pocock Professor Anil Wipat	Integration of constraints documented in SBML, SBO, and the SBML Manual facilitates validation of biological models	2007
Dr Frank Gibson Professor Anil Wipat Dr Matthew Pocock Dr Nick Morris	GELI: a data model for the representation of a gel electrophoresis experiment	2006
Dr Matthew Pocock Dr Peter Li	Taverna: A tool for building and running workflows of services	2006
Dr Peter Li Dr Phillip Lord Dr Matthew Pocock Professor Anil Wipat	Taverna: lessons in creating a workflow environment for the life sciences	2006
Professor Anil Wipat Dr Matthew Pocock Professor Pete Lee Professor Paul Watson Dr Keith Flanagan et al.	A grid-based system for microbial genome comparison and analysis	2005
Dr Yudong Sun Professor Anil Wipat Dr Matthew Pocock Professor Pete Lee Dr Keith Flanagan et al.	Exploring Microbial Genome Sequences to Identify Protein Families on the Grid	2005
Dr Yudong Sun Professor Anil Wipat Dr Matthew Pocock Professor Pete Lee Professor Paul Watson et al.	A Grid-based System for Microbial Genome Comparison and Analysis	2004
Professor Anil Wipat Dr Yudong Sun Dr Matthew Pocock Professor Pete Lee Professor Paul Watson et al.	Developing Grid-based Systems for Microbial Genome	2004
Dr Keith Flanagan Dr Matthew Pocock Professor Pete Lee Professor Anil Wipat	Ontology for genome comparison and genomic rearrangements	2004
Dr Matthew Pocock Professor Anil Wipat Dr Peter Li	Taverna: A tool for the composition and enactment of bioinformatics workflows	2004