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Genomic and Transcriptomic Adaptation to Chlorhexidine in Streptococcus spp.

Lookup NU author(s): Professor Nicholas JakubovicsORCiD

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This work is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).


Abstract

Antiseptics such as chlorhexidine digluconate (CHX) are widely used in clinical dental practice, but their potential risks, particularly regarding antimicrobial resistance (AMR), are not yet known. This study explores the genomic and transcriptomic mechanisms of CHX adaptation in 3 clinical isolates of Streptococcus spp. and their adapted counterparts. The genomic analysis revealed mutations in genes related to membrane structure, DNA repair, and metabolic processes. Mutations include those in diacylglycerol kinase that occurred in Streptococcus salivarius and the autolysin N-acetylmuramoyl-L-alanine amidase homologues in both Streptococcus mitis and Streptococcus vestibularis, which may contribute to enhanced CHX resistance. Our findings showed stress response genes constantly expressed in all 3 CHX-adapted strains, regardless of acute CHX exposure. Commonly upregulated genes were related to oxidative stress, DNA repair, and metabolic pathway changes, especially amino acid related metabolism. In addition, cell surface restructuring, multiple ABC transporter genes, as well as antimicrobial resistance–associated genes were constitutively expressed. Homologue genes that were significantly upregulated across all 3 species after mutation included recD (DNA repair), potE (amino acid transport), and groEL (stress response). In addition, we saw an increase in a gene associated with the penicillin-binding protein PBP2a in all strains. Beyond these conserved adaptations, we observed species-specific shifts under prolonged CHX exposure. In S. vestibularis, glutathione synthesis genes increased while fatty acid metabolism genes were downregulated. S. salivarius showed elevated expression of genes related to organic anion transport and RNA modification. S. mitis exhibited changes in pyrimidine metabolism, ion homeostasis, and pyruvate dehydrogenase complex genes. Uniquely, S. mitis also showed acute CHX response with upregulation of carbohydrate metabolism and phosphotransferase system genes. These findings highlight the complexity of CHX-induced adaptation, suggesting connections to genetic mutations and emphasizing the need for further research to understand and mitigate AMR risks.


Publication metadata

Author(s): Daller B, Auer DL, Buchalla W, Bartsch S, Gessner A, Jakubovics NS, Al-Ahmad A, Hiergeist A, Cieplik F

Publication type: Article

Publication status: Published

Journal: Journal of Dental Research

Year: 2025

Pages: Epub ahead of print

Online publication date: 03/04/2025

Acceptance date: 27/01/2025

Date deposited: 02/05/2025

ISSN (print): 0022-0345

ISSN (electronic): 1544-0591

Publisher: Sage Publications

URL: https://doi.org/10.1177/00220345251320912

DOI: 10.1177/00220345251320912

ePrints DOI: 10.57711/nybe-7345

PubMed id: 40181292


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Funding

Funder referenceFunder name
Bavarian Ministry of Science and the Arts
Deutsche Forschungsgemeinschaft (grants CI 263/3-1 and AL 1179/4-1)

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