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AMBRA1 levels predict resistance to MAPK inhibitors in melanoma

Lookup NU author(s): Professor Penny Lovat

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This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License (CC BY-NC-ND).


Abstract

© 2024 the Author(s). Intrinsic and acquired resistance to mitogen-activated protein kinase inhibitors (MAPKi) in melanoma remains a major therapeutic challenge. Here, we show that the clinical development of resistance to MAPKi is associated with reduced tumor expression of the melanoma suppressor Autophagy and Beclin 1 Regulator 1 (AMBRA1) and that lower expression levels of AMBRA1 predict a poor response to MAPKi treatment. Functional analyses show that loss of AMBRA1 induces phenotype switching and orchestrates an extracellular signal-regulated kinase (ERK)-independent resistance mechanism by activating focal adhesion kinase 1 (FAK1). In both in vitro and in vivo settings, melanomas with low AMBRA1 expression exhibit intrinsic resistance to MAPKi therapy but higher sensitivity to FAK1 inhibition. Finally, we show that the rapid development of resistance in initially MAPKi-sensitive melanomas can be attributed to preexisting subclones characterized by low AMBRA1 expression and that cotreatment with MAPKi and FAK1 inhibitors (FAKi) effectively prevents the development of resistance in these tumors. In summary, our findings underscore the value of AMBRA1 expression for predicting melanoma response to MAPKi and supporting the therapeutic efficacy of FAKi to overcome MAPKi-induced resistance.


Publication metadata

Author(s): Leo LD, Pagliuca C, Kishk A, Rizza S, Tsiavou C, Pecorari C, Dahl C, Pacheco MP, Tholstrup R, Brewer JR, Berico P, Hernando E, Cecconi F, Ballotti R, Bertolotto C, Filomeni G, Gjerstorff MF, Sauter T, Lovat P, Guldberg P, De Zio D

Publication type: Article

Publication status: Published

Journal: Proceedings of the National Academy of Sciences of the United States of America

Year: 2024

Volume: 121

Issue: 25

Online publication date: 13/06/2024

Acceptance date: 20/05/2024

Date deposited: 05/02/2025

ISSN (print): 0027-8424

ISSN (electronic): 1091-6490

Publisher: National Academy of Sciences

URL: https://doi.org/10.1073/pnas.2400566121

DOI: 10.1073/pnas.2400566121

Data Access Statement: The transcriptomic datasets analyzed in the current study are public available under the GEO numbers GSE50509, GSE65185, GSE129127, and GSE116237. The RNAseq datasets from the TCGA-SKCM are available at http://cancergenome.nih.gov/. The protein data from the CCLE melanoma cell lines are available at portals.broadinstitute.org/ccle

PubMed id: 38870061


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Funding

Funder referenceFunder name
AIRC Foundation
Danish Cancer Society
Leo Foundation
Melanoma Research Alliance (MRA 620385)
NEYE Foundation
Novo Nordisk Foundation

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