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A Multiplexed Quantitative Proteomics Approach to the Human Plasma Protein Signature

Lookup NU author(s): Dr Marco Trevisan-HerrazORCiD

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This work is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).


Abstract

© 2024 by the authors.Despite the plasma proteome being able to provide a unique insight into the health and disease status of individuals, holding singular promise as a source of protein biomarkers that could be pivotal in the context of personalized medicine, only around 100 proteins covering a few human conditions have been approved as biomarkers by the US Food and Drug Administration (FDA) so far. Mass spectrometry (MS) currently has enormous potential for high-throughput analysis in clinical research; however, plasma proteomics remains challenging mainly due to the wide dynamic range of plasma protein abundances and the time-consuming procedures required. We applied a new MS-based multiplexed proteomics workflow to quantitate proteins, encompassing 67 FDA-approved biomarkers, in >1300 human plasma samples from a clinical cohort. Our results indicate that this workflow is suitable for large-scale clinical studies, showing good accuracy and reproducibility (coefficient of variation (CV) < 20 for 90% of the proteins). Furthermore, we identified plasma signature proteins (stable in time on an individual basis), stable proteins (exhibiting low biological variability and high temporal stability), and highly variable proteins (with low temporal stability) that can be used for personalized health monitoring and medicine.


Publication metadata

Author(s): Nunez E, Gomez-Serrano M, Calvo E, Bonzon-Kulichenko E, Trevisan-Herraz M, Rodriguez JM, Garcia-Marques F, Magni R, Lara-Pezzi E, Martin-Ventura JL, Camafeita E, Vazquez J

Publication type: Article

Publication status: Published

Journal: Biomedicines

Year: 2024

Volume: 12

Issue: 9

Online publication date: 18/09/2024

Acceptance date: 09/09/2024

Date deposited: 07/10/2024

ISSN (electronic): 2227-9059

Publisher: Multidisciplinary Digital Publishing Institute (MDPI)

URL: https://doi.org/10.3390/biomedicines12092118

DOI: 10.3390/biomedicines12092118

Data Access Statement: MS raw data have been deposited in Peptide Atlas (http://www. peptideatlas.org/PASS/PASS01382 and http://www.peptideatlas.org/PASS/PASS01522, accessed on 17 August 2024.


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Funding

Funder referenceFunder name
European Union NextGenerationEU/PRTR
LCF/PR/HR22/52420019 funded by “la Caixa” Foundation
PID2021-122348NB-I00 funded by MICIU/AEI/10.13039/501100011033
PLEC2022-009298, PLEC2022-009235, and EQC2021-007053-P funded by MICIU/AEI/10.13039/501100011033
S2022/BMD-7333-CM (INMUNOVAR-CM) funded by Comunidad de Madrid
Severo Ochoa Center of Excellence (grant CEX2020-001041-S funded by MICIU/AEI/10.13039/501100011033

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