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Antibiotic origami: selective formation of spirotetronates in abyssomicin biosynthesis

Lookup NU author(s): Dr James StachORCiD, Professor Paul RaceORCiD

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This work is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).


Abstract

© 2024 The Royal Society of Chemistry.The abyssomicins are a structurally intriguing family of bioactive natural products that include compounds with potent antibacterial, antitumour and antiviral activities. The biosynthesis of the characteristic abyssomicin spirotetronate core occurs via an enzyme-catalysed intramolecular Diels-Alder reaction, which proceeds via one of two distinct stereochemical pathways to generate products differing in configuration at the C15 spirocentre. Using the purified spirotetronate cyclases AbyU (from abyssomicin C/atrop-abyssomicin C biosynthesis) and AbmU (from abyssomicin 2/neoabyssomicin biosynthesis), in combination with synthetic substrate analogues, here we show that stereoselectivity in the spirotetronate-forming [4 + 2]-cycloaddition is controlled by a combination of factors attributable to both the enzyme and substrate. Furthermore, an achiral substrate was enzymatically cyclised to a single enantiomer of a spirocyclic product. X-ray crystal structures, molecular dynamics simulations, and assessment of substrate binding affinity and reactivity in both AbyU and AbmU establish the molecular determinants of stereochemical control in this important class of biocatalysts.


Publication metadata

Author(s): Mbatha SZ, Back CR, Devine AJ, Mulliner HM, Johns ST, Lewin H, Cheung KA, Zorn K, Stach JEM, Hayes MA, van der Kamp MW, Race PR, Willis CL

Publication type: Article

Publication status: Published

Journal: Chemical Science

Year: 2024

Volume: 34

Issue: 15

Pages: 14009-14015

Online publication date: 12/08/2024

Acceptance date: 25/07/2024

Date deposited: 27/08/2024

ISSN (print): 2041-6520

ISSN (electronic): 2041-6539

Publisher: Royal Society of Chemistry

URL: https://doi.org/10.1039/d4sc03253e

DOI: 10.1039/d4sc03253e

Data Access Statement: The data supporting this article have been reported as part of the ESI. https://doi.org/10.1039/d4sc03253e


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Funding

Funder referenceFunder name
BB/L01386X/1
BB/M012107/1
BB/T001968/1
BB/M025624/1
BBSRC
EPSRC

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